Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs10897296 | chr11:62607568 | G/C | 7.55E-5 | 490 | 16.22 | 14.33 | 14.27 | KM Plot |
| THCA | rs10901771 | chr10:126268368 | C/T | 1.75E-5 | 476 | 16.15 | 16.35 | 10.6 | KM Plot |
| THCA | rs10908529 | chr1:157034313 | G/A | 8.06E-8 | 481 | 16.67 | 14.93 | 11.3 | KM Plot |
| THCA | rs10911511 | chr1:184087925 | C/T | 0 | 476 | 15.65 | 17.6 | 9.47 | KM Plot |
| THCA | rs10916468 | chr1:224388226 | G/A | 5.26E-5 | 485 | 16.67 | 14.47 | 13.97 | KM Plot |
| THCA | rs10916533 | chr1:224418593 | T/A | 0.000246 | 489 | 16.8 | 14.38 | 11.48 | KM Plot |
| THCA | rs10916535 | chr1:224420288 | C/T | 0.000246 | 489 | 16.8 | 14.38 | 11.48 | KM Plot |
| THCA | rs10917120 | chr1:22350165 | G/A | 3.21E-5 | 473 | 14.73 | 17.73 | 12.4 | KM Plot |
| THCA | rs10917131 | chr1:22376188 | G/A | 1.09E-7 | 484 | 15.17 | 18.55 | 6.57 | KM Plot |
| THCA | rs10917139 | chr1:22401538 | A/G | 4.66E-8 | 490 | 9.47 | 17.25 | 15.32 | KM Plot |
| THCA | rs10917145 | chr1:22412645 | A/G | 4.65E-8 | 490 | 15.17 | 17.83 | 9.47 | KM Plot |
| THCA | rs10917152 | chr1:22425642 | C/T | 4.69E-9 | 490 | 15.63 | 16.87 | 12.37 | KM Plot |
| THCA | rs10917158 | chr1:22454373 | C/G | 4.68E-7 | 481 | 15.63 | 17.93 | 6.87 | KM Plot |
| THCA | rs10917159 | chr1:22454791 | C/A | 4.59E-7 | 483 | 15.33 | 17.93 | 6.87 | KM Plot |
| THCA | rs10917589 | chr1:162678334 | C/T | 9.7E-7 | 490 | 16.23 | 15.13 | 12.07 | KM Plot |